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PPD_00004X1.1

Display Name: Uganda/PPD_00004X1.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

Sample details

Collection date
2025-01-19
Country
Uganda
Admin level 1
Kampala

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Central Public Health Laboratories, Kampala

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-02-05
NCBI update date
2025-02-06

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18225
Completeness
96.56%
# of SNPs
171
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OZ222062.1
Submitting group
Date submitted
2025-11-25 14:41:15 UTC
Date released
2025-11-25 14:52:16 UTC
Earliest release date
2025-02-05

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

    • L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I

    • NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:V185I
  • VP35:I190T

    • VP40

  • VP40:M276I

    • sGP

  • sGP:S17N

    • ssGP

  • ssGP:S17N
    • Deletions
    None
    Insertions
    None

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