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PPD_00013JS.1
Download
Download FASTA
Download metadata TSV
YFV/Ghana/PPD_00013JS.1/2021-10-26
J. H. K. Bonney,
T. Sanders,
D. Pratt,
B. Agbodzi,
D. Laryea,
S. Kumordjie,
K. Attiku,
G. Mawuli,
C. Yeboah,
J. Odoom,
C. Kubio &
F. Asiedu-Bekoe
University of Ghana Noguchi Memorial Institute for Medical Research, Virology Department
Sample details
Collection date
2021-10-26
Sampling location
Ghana (Damongo)
Isolate name
VHF-21-014/GHA/Damongo/2021
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-11 17:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade V
INSDC
INSDC accession
OM066735.1
NCBI release date
2022-01-27
NCBI update date
2022-01-27
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
OM066735.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:30:05 UTC
Earliest release date
2022-01-27
Alignment and QC
Length
10478 (93%)
# of SNPs
447
# of unknown bases
371
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
C
370
T
T
430
C
T
432
C
T
454
G
T
455
C
G
466
A
A
473
G
C
474
G
A
543
T
C
559
G
A
574
T
C
610
T
C
631
T
C
661
T
T
694
C
T
709
C
G
784
A
A
814
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
A
20
V
E
E:
R
52
G
E:
V
56
A
E:
V
170
A
E:
I
173
T
E:
T
200
K
E:
I
299
M
E:
V
322
L
E:
R
331
K
E:
I
335
L
E:
R
380
T
E:
V
407
A
E:
T
416
A
E:
N
450
S
M
M:
F
36
L
M:
T
48
A
NS1
NS1:
F
79
L
NS1:
L
184
M
NS1:
K
276
R
NS1:
V
307
I
NS2a
NS2a:
I
3
T
NS2a:
V
6
I
NS2a:
V
118
M
NS2a:
K
143
I
NS2a:
M
152
L
NS2a:
M
160
V
NS2a:
F
183
S
NS2a:
S
187
P
NS2a:
Y
202
D
NS2a:
I
220
L
NS2a:
R
223
G
NS2b
NS2b:
L
37
I
NS2b:
K
54
R
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
V
195
I
NS3:
S
257
R
NS3:
V
280
I
NS3:
N
485
D
NS3:
S
613
A
NS3:
E
614
D
NS4a
NS4a:
M
72
L
NS4a:
P
101
H
NS4a:
V
107
I
NS4b
NS4b:
N
18
D
NS4b:
L
19
S
NS4b:
P
85
A
NS4b:
M
95
I
NS4b:
M
117
T
NS4b:
E
145
K
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
V
162
M
RdRPol:
K
275
R
RdRPol:
S
292
T
RdRPol:
V
643
A
RdRPol:
Q
721
L
RdRPol:
E
815
W
RdRPol:
M
833
V
RdRPol:
K
836
E
RdRPol:
L
901
P
prM
prM:
K
21
I
prM:
F
125
L
prM:
T
137
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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