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PPD_0001VCD.1
Download
Download FASTA
Download metadata TSV
YFV/Colombia/807033743/2024-02
L. C. Pardo,
M. F. Carreno,
M. A. Porras,
A. M. Rodriguez-Paz,
S. Y. Gomez,
H. A. Ruiz-Moreno,
A. Rosales,
D. A. Alvarez,
C. E. Franco &
K. D. Laiton-Donato
Instituto Nacional de Salud, Direccion de Investigacion en Salud Publica
Sample details
Collection date
2024-02
Sampling location
Colombia
Isolate name
807033743
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-11 17:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade VI
INSDC
INSDC accession
PP869888.1
NCBI release date
2024-06-23
NCBI update date
2024-06-23
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PP869888.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:40:06 UTC
Earliest release date
2024-06-23
Alignment and QC
Length
10003 (78%)
# of SNPs
1289
# of unknown bases
1527
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
A
346
G
G
352
A
C
354
T
T
358
C
A
361
G
A
367
G
C
370
T
A
376
G
C
385
G
T
389
C
A
400
T
A
409
G
T
421
A
T
427
A
T
433
C
C
434
T
G
436
A
G
442
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
S
1
T
2K:
V
18
I
2K:
A
20
V
C
C:
A
79
V
E
E:
R
52
G
E:
V
56
A
E:
N
62
S
E:
H
67
N
E:
A
83
E
E:
V
170
A
E:
I
173
T
E:
K
177
R
E:
G
191
S
E:
T
200
K
E:
R
207
K
E:
R
243
K
E:
D
270
N
E:
N
271
S
E:
N
272
K
E:
S
282
A
E:
I
299
M
E:
F
305
S
Show more
NS1
NS1:
I
21
V
NS1:
F
79
L
NS1:
P
93
S
NS1:
V
96
I
NS1:
I
177
M
NS1:
A
218
T
NS1:
E
240
D
NS1:
I
286
V
NS1:
I
287
V
NS1:
N
290
G
NS1:
V
307
I
NS1:
H
324
R
NS1:
R
338
K
NS1:
E
342
D
NS2a
NS2a:
V
6
I
NS2a:
M
30
I
NS2a:
V
35
M
NS2a:
L
48
I
NS2a:
L
216
M
NS2a:
I
220
V
NS2b
NS2b:
I
32
V
NS2b:
L
37
I
NS2b:
K
54
R
NS2b:
A
77
T
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
H
19
Y
NS3:
I
68
V
NS3:
V
103
A
NS3:
N
485
D
NS3:
V
515
I
NS3:
K
535
R
NS3:
E
614
D
NS4a
NS4a:
V
5
M
NS4a:
F
30
L
NS4a:
I
53
T
NS4a:
I
58
V
NS4a:
M
67
V
NS4a:
V
107
I
NS4a:
I
119
V
NS4b
NS4b:
S
25
A
NS4b:
L
32
F
NS4b:
M
95
I
NS4b:
S
121
T
NS4b:
E
145
K
NS4b:
N
152
S
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
K
95
R
RdRPol:
R
107
K
RdRPol:
D
108
E
RdRPol:
I
132
V
RdRPol:
V
138
T
RdRPol:
S
152
P
RdRPol:
V
162
M
RdRPol:
A
173
G
RdRPol:
D
177
E
RdRPol:
N
178
S
RdRPol:
V
229
I
RdRPol:
K
275
R
RdRPol:
E
276
A
RdRPol:
M
290
T
RdRPol:
T
291
A
Show more
prM
prM:
K
6
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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