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PPD_0001VE9.1

YFV/Brazil/D262/2023-06-26
S. L. Machado, J. A. F. Alencar & D. C. V. Alves

Universidade Federal do Rio de Janeiro, Analises Clinicas e Toxicologicas

Sample details

Collection date
2023-06-26
Sampling location
Brazil
Isolate name
D262

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:19insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade V

INSDC

INSDC accession
NCBI release date
2024-07-06
NCBI update date
2024-07-06

Host

Host
Host name - scientific
Uranotaenia pulcherrima

Submission details

Submission ID
PP938638.1
Submitting group
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:40:06 UTC
Earliest release date
2024-07-06

Alignment and QC

Length
553 (12.1%)
# of SNPs
109
# of inserted bases
48
# of deleted bases
808
# of frame shifts
8
Frame shifts
RdRPol:465-467(nt:9029-9037),RdRPol:471-493(nt:9045-9115),RdRPol:543-565(nt:9262-9329),RdRPol:578-582(nt:9366-9380),RdRPol:592-604(nt:9408-9446),RdRPol:615-625(nt:9478-9509),RdRPol:660-671(nt:9613-9649),RdRPol:863-905(nt:10221-10351)

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T9032C
  • T9033C
  • A9049C
  • A9093C
  • T9095C
  • T9096C
  • A9099T
  • G9119A
  • T9183A
  • G9193T
  • T9238C
  • T9247C
  • A9250C
  • G9259A
  • C9262A
  • C9267T
  • A9268T
  • A9270G
Deletions

9028, 9038, 9039, 9044, 9260, 9261, 9284-9295, 9362-9365, 9381-9397, 9406, 9407, 9422-9432, 9464-9477, 9488, 9489, 9510-9567, 9578-9580, 9606-9612, 9640, 9650-10169, 10175-10220, 10226-10330
Insertions

ins_9115:T, ins_9276:TTC, ins_9314:T, ins_9329:GTCG, ins_9340:CCCCCTTTCGTATTGCCGCCCGCTTTTTACAAC, ins_9446:T, ins_9501:TC, ins_9572:TTG

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

RdRPol

  • RdRPol:E495K
  • RdRPol:L516Q
Deletions

RdRPol

RdRPol:468, RdRPol:470, RdRPol:542, RdRPol:566-577, RdRPol:583-591, RdRPol:605-614, RdRPol:626-659, RdRPol:672-845, RdRPol:847-862
Insertions

RdRPol

ins_RdRPol:580:TAPPF, ins_RdRPol:879:KT

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