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PPD_0001VF7.1

YFV/Brazil/D301/2023-06-26
S. L. Machado, J. A. F. Alencar & D. C. V. Alves

Universidade Federal do Rio de Janeiro, Analises Clinicas e Toxicologicas

Sample details

Collection date
2023-06-26
Sampling location
Brazil
Isolate name
D301

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:19insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade V

INSDC

INSDC accession
NCBI release date
2024-07-06
NCBI update date
2024-07-06

Host

Host
Host name - scientific
Culex

Submission details

Submission ID
PP938639.1
Submitting group
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:40:06 UTC
Earliest release date
2024-07-06

Alignment and QC

Length
428 (10.5%)
# of SNPs
70
# of inserted bases
2
# of deleted bases
716
# of frame shifts
1
# of stop codons
1
Frame shifts
RdRPol:466-542(nt:9030-9262)
Stop Codons
RdRPol:612

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T9034G
  • G9035C
  • A9039G
  • A9040C
  • A9049C
  • T9238C
  • T9247C
  • A9250C
  • G9259T
  • C9260A
  • G9261A
  • C9262A
  • T9264C
  • C9267T
  • G9269T
  • A9270G
  • A9274C
  • A9276G
Deletions

8983-9029, 9042-9044, 9422-9469, 9481-9528, 9536-10048, 10055-10111
Insertions

ins_9095:C, ins_9262:T

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

RdRPol

  • RdRPol:N556R
  • RdRPol:Y557V
  • RdRPol:A566G
  • RdRPol:M570R
  • RdRPol:N576K
  • RdRPol:K577T
  • RdRPol:N612*
  • RdRPol:S790Q
  • RdRPol:W791T
  • RdRPol:V792I
  • RdRPol:Q794R
  • RdRPol:R796K
  • RdRPol:T798H
  • RdRPol:W799T
  • RdRPol:S800G
  • RdRPol:T823Y
  • RdRPol:K845H
  • RdRPol:L904P
  • RdRPol:I905H
Deletions

RdRPol

RdRPol:450-465, RdRPol:543-554, RdRPol:579-610, RdRPol:614-788, RdRPol:802-821, RdRPol:825-842, RdRPol:847-901
Insertions

RdRPol

ins_RdRPol:905:R

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