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PPD_0001VH2.1

YFV/Brazil/D283/2023-06-26
S. L. Machado, J. A. F. Alencar & D. C. V. Alves

Universidade Federal do Rio de Janeiro, Analises Clinicas e Toxicologicas

Sample details

Collection date
2023-06-26
Sampling location
Brazil
Isolate name
D283

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:19insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade V

INSDC

INSDC accession
NCBI release date
2024-07-06
NCBI update date
2024-07-06

Host

Host
Host name - scientific
Anopheles evansae

Submission details

Submission ID
PP938642.1
Submitting group
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:40:06 UTC
Earliest release date
2024-07-06

Alignment and QC

Length
224 (8.79%)
# of SNPs
23
# of inserted bases
2
# of deleted bases
733
# of frame shifts
3
Frame shifts
RdRPol:460-493(nt:9014-9113),RdRPol:497-519(nt:9124-9191),RdRPol:535-905(nt:9238-10351)

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • A8994T
  • G9007C
  • A9011C
  • G9016A
  • A9030G
  • G9031A
  • T9032G
  • T9033G
  • A9109G
  • T9110G
  • A9123T
  • A9148T
  • A9151C
  • G9152C
  • G9153T
  • G9155C
  • A9162T
  • A9167C
Deletions

9013, 9192, 9200-9237, 9245-9249, 9253-9940
Insertions

ins_9113:A, ins_9123:T

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

RdRPol

  • RdRPol:Y453F
  • RdRPol:D496V
Deletions

RdRPol

RdRPol:522-534
Insertions
N/A

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