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PPD_0001XZ2.1

YFV/Brazil/UWARN_YFVHUMMG_001_25FA/2024-12-26
V. das Gracas Dantas Andrade, T. E. Ribeiro Adelino, V. Fonseca, K. Moreno, D. La-Roque, L. Augusto Pereira, F. Campos de Melo Iani, S. Goncalves Penante, S. Moreira da Silva Chagas, K. C. de Lima Furtado, A. Simoes Jorge Junior, L. M. Ribeiro Tome, N. Rocha Guimaraes, L. Oliveira Lamounier, M. Giovanetti & L. Alcantara

Universidade do Estado da Bahia, DCET-1

Sample details

Collection date
2024-12-26
Sampling location
Brazil (Itapeva, Minas Gerais)
Isolate name
UWARN_YFVHUMMG_001_25FA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:19insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade VI

INSDC

INSDC accession
NCBI release date
2025-06-14
NCBI update date
2025-06-14

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
PV710605.1
Submitting group
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:50:14 UTC
Earliest release date
2025-06-14

Alignment and QC

Length
10207 (76.8%)
# of SNPs
1245
# of unknown bases
1864

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T178C
  • A192G
  • A218G
  • A225G
  • C226T
  • T247C
  • A260G
  • C262T
  • A281G
  • T283C
  • A295G
  • C301T
  • A304T
  • C307T
  • C310T
  • A313G
  • G318A
  • G319A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

C

  • C:N25S
  • C:I34V
  • C:N36S
  • C:I48V
  • C:I55V
  • C:R67K
  • C:K70R
  • C:A79V

E

  • E:R52G
  • E:V56A
  • E:N62S
  • E:H67N
  • E:A83E
  • E:V170A
  • E:I173T
  • E:K177R
  • E:G191S
  • E:T200K
  • E:R207K
  • E:R243K
  • E:D270N
  • E:N271S
  • E:N272K
  • E:S282A
  • E:I299M
  • E:F305S

M

  • M:F36L
  • M:V44A
  • M:T48A

NS1

  • NS1:I21V
  • NS1:I177M
  • NS1:A218T
  • NS1:E240D
  • NS1:I286V
  • NS1:I287V
  • NS1:N290S
  • NS1:V307I
  • NS1:R338K
  • NS1:E342D

NS2a

  • NS2a:V6I
  • NS2a:M30I
  • NS2a:V35M
  • NS2a:L48I
  • NS2a:V118M
  • NS2a:T147V
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:L216M

NS2b

  • NS2b:I32V
  • NS2b:L37I
  • NS2b:K54R
  • NS2b:A77T

NS3

  • NS3:I68V
  • NS3:V103A
  • NS3:V195I
  • NS3:R259K
  • NS3:R397K
  • NS3:S613A
  • NS3:E614D

NS4a

  • NS4a:V5M
  • NS4a:M24V
  • NS4a:F30L
  • NS4a:I53T
  • NS4a:I58V

NS4b

  • NS4b:S25A
  • NS4b:P26L
  • NS4b:L32F
  • NS4b:M95I
  • NS4b:S121T
  • NS4b:E145K

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:K95R
  • RdRPol:R107K
  • RdRPol:D108E
  • RdRPol:I132V
  • RdRPol:V138I
  • RdRPol:S152P
  • RdRPol:V162M
  • RdRPol:A173S
  • RdRPol:D177E
  • RdRPol:N178S
  • RdRPol:V229I
  • RdRPol:Y413F
  • RdRPol:K441R
  • RdRPol:M526L
  • RdRPol:D527E

prM

  • prM:K6R
  • prM:F125L
  • prM:V133A
  • prM:T137A
Deletions
N/A
Insertions
N/A

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