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PPD_0001Y00.1

YFV/Brazil/UWARN_YFVHUMMG_0014_25FA/2025-01-17
V. das Gracas Dantas Andrade, T. E. Ribeiro Adelino, V. Fonseca, K. Moreno, D. La-Roque, L. Augusto Pereira, F. Campos de Melo Iani, S. Goncalves Penante, S. Moreira da Silva Chagas, K. C. de Lima Furtado, A. Simoes Jorge Junior, L. M. Ribeiro Tome, N. Rocha Guimaraes, L. Oliveira Lamounier, M. Giovanetti & L. Alcantara

Universidade do Estado da Bahia, DCET-1

Sample details

Collection date
2025-01-17
Sampling location
Brazil (Extrema, Minas Gerais)
Isolate name
UWARN_YFVHUMMG_0014_25FA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:19insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
Clade VI

INSDC

INSDC accession
NCBI release date
2025-06-14
NCBI update date
2025-06-14

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
PV710606.1
Submitting group
Date submitted
2026-03-11 17:19:28 UTC
Date released
2026-03-11 17:50:14 UTC
Earliest release date
2025-06-14

Alignment and QC

Length
9312 (49%)
# of SNPs
825
# of ambiguous bases
1
# of unknown bases
3984

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • A1024G
  • T1030C
  • T1042C
  • C1046T
  • G1051A
  • A1054G
  • T1072G
  • T1081C
  • T1094C
  • G1096A
  • C1102A
  • G1111A
  • A1117T
  • A1127G
  • T1140C
  • G1141A
  • A1147G
  • T1153C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:V18I
  • 2K:A20V

E

  • E:R52G
  • E:V56A
  • E:N62S
  • E:A83E
  • E:V170A
  • E:I173T
  • E:K177R
  • E:G191S
  • E:T200K
  • E:R207K
  • E:R243K
  • E:D270N
  • E:N271S
  • E:N272K
  • E:S282A
  • E:I299M
  • E:F305S
  • E:V318A

NS1

  • NS1:I286V
  • NS1:I287V
  • NS1:N290S
  • NS1:V307I
  • NS1:R338K
  • NS1:E342D

NS2a

  • NS2a:V6I
  • NS2a:M30I
  • NS2a:V35M
  • NS2a:L48I
  • NS2a:V118M
  • NS2a:T147V
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:L216M

NS2b

  • NS2b:I32V
  • NS2b:L37I
  • NS2b:K54R
  • NS2b:A77T

NS3

  • NS3:I68V
  • NS3:V103A
  • NS3:V195I
  • NS3:R259K

NS4b

  • NS4b:S25A
  • NS4b:P26L
  • NS4b:L32F
  • NS4b:M95I
  • NS4b:S121T
  • NS4b:E145K

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:K95R
  • RdRPol:R107K
  • RdRPol:D108E
  • RdRPol:I132V
  • RdRPol:V138I
  • RdRPol:S152P
  • RdRPol:V162M
  • RdRPol:A173S
  • RdRPol:D177E
  • RdRPol:N178S
  • RdRPol:V229I
  • RdRPol:Y413F
  • RdRPol:K441R
  • RdRPol:M526L
  • RdRPol:D527E
Deletions
N/A
Insertions
N/A

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