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PPD_0002EQ1.1
Download
Download FASTA
Download metadata TSV
Canada/PPD_0002EQ1.1/2017-07
G. Wong,
W. G. Cao,
S. H. He,
Z. R. Zhang,
W. J. Zhu,
E. Moffat,
H. Ebihara,
C. Embury-Hyatt,
X. G. Qiu,
G. Wang,
W. Cao,
S. He,
Z. Zhang,
W. Zhu &
X. Qiu
Public Health Agency of Canada, Special Pathogens Program, National Microbiology Laboratory
Sample details
Collection date
2017-07
Sampling location
Canada
Isolate name
NML/C.porcellus-lab/AGO/2005/Ang-GA-P2
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-02 16:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
MARV.A.3
INSDC
INSDC accession
MF939097.1
NCBI release date
2018-06-05
NCBI update date
2018-06-05
Host
Host
Cavia porcellus
Is lab host
True
Submission details
Submission ID
MF939097.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-02 16:02:33 UTC
Date released
2026-04-02 16:07:17 UTC
Earliest release date
2018-06-05
Alignment and QC
Length
19114 (100%)
# of SNPs
1307
# of inserted bases
3
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
C
115
T
G
124
A
G
127
A
C
142
T
C
148
T
A
169
G
T
181
C
C
256
T
G
289
A
T
292
C
T
304
C
T
307
C
G
310
A
G
337
A
G
340
A
A
346
G
C
358
T
T
412
C
Show more
Deletions
N/A
Insertions
ins_18681:G, ins_18872:G, ins_19111:A
Amino acid substitutions
Substitutions called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
F
6
L
GP:
T
16
V
GP:
N
18
T
GP:
N
28
I
GP:
T
74
A
GP:
A
214
T
GP:
I
231
K
GP:
P
233
L
GP:
R
239
H
GP:
I
242
V
GP:
P
248
S
GP:
S
260
N
GP:
A
267
T
GP:
R
276
Q
GP:
H
279
Y
GP:
V
285
A
GP:
D
317
G
GP:
A
318
V
Show more
L
L:
D
124
N
L:
S
128
P
L:
A
129
T
L:
I
214
V
L:
H
335
C
L:
D
336
C
L:
V
359
I
L:
E
536
D
L:
I
757
V
L:
S
957
A
L:
K
981
R
L:
E
1143
K
L:
S
1163
A
L:
K
1164
E
L:
L
1169
F
L:
E
1180
G
L:
A
1364
S
L:
N
1374
S
Show more
NP
NP:
M
428
I
NP:
D
440
S
NP:
G
481
S
NP:
L
500
I
NP:
N
501
D
NP:
P
514
L
NP:
Q
518
P
NP:
A
577
V
NP:
N
578
S
NP:
P
579
S
NP:
M
612
A
NP:
D
625
Y
VP24
VP24:
A
12
V
VP24:
N
17
K
VP24:
V
66
I
VP24:
N
242
S
VP30
VP30:
V
15
A
VP30:
T
18
S
VP30:
Y
34
H
VP30:
A
88
T
VP30:
M
201
I
VP35
VP35:
A
27
T
VP35:
I
67
V
VP35:
K
69
R
VP35:
R
70
K
VP35:
M
180
T
VP40
VP40:
N
56
K
VP40:
I
197
V
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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