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PPD_000374D.1

Display Name: Guinea/PPD_000374D.1/2021
A. K. Keita, F. R. Koundouno, M. Faye, A. Dux, J. Hinzmann, H. Diallo, A. Ayouba, F. Le Marcis, B. Soropogui, K. Ifono, M. M. Diagne, M. S. Sow, J. A. Bore, S. Calvignac-Spencer, N. Vidal, J. Camara, M. B. Keita, A. Renevey, A. Diallo, A. K. Soumah, S. L. Millimono, A. Mari-Saez, M. Diop, A. Dore, ...; K. Prieto

Submission details

Submission ID
MZ605320.1
Submitting group
Date submitted
2025-07-03 10:51:58 UTC
Date released
2025-07-03 11:03:11 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 10:52insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur de Dakar, Virology Department

Alignment and QC metrics

Completeness
98.71%
Length
18830
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
573
Total unknown nucs
115

Sample details

Earliest release date
2021-09-08
Collection subdivision level 1
Nzerekore
Collection country
Guinea
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-09-08

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2021-09-08
NCBI update date
2021-10-01

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • C127T
  • C149T
  • A155C
  • A182G
  • A187G
  • C230T
  • T236C
  • A257G
  • C261T
  • G263A
  • A295C
  • C356T
  • G360A
  • T369C
  • T377C
  • T378C
  • G381A
  • T385C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:A82V
  • GP:T262A
  • GP:V310A
  • GP:A315P
  • GP:G331E
  • GP:T336N
  • GP:E359K
  • GP:S377P
  • GP:L378P
  • GP:P382T
  • GP:E405G
  • GP:T411A
  • GP:S422P
  • GP:P430L
  • GP:T441A
  • GP:F443S
  • GP:P446L
  • GP:H455Y
  • GP:A503V
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:F150L
  • L:M197L
  • L:A215T
  • L:I259V
  • L:M337I
  • L:Q346H
  • L:D692N
  • L:D759G
  • L:L888S
  • L:F1142V
  • L:S1383N
  • L:R1405Q
  • L:Y1594H
  • L:Q1607H
  • L:S1615N
  • L:S1645N

    • NP

  • NP:I8V
  • NP:A11T
  • NP:R111C
  • NP:K128R
  • NP:S465G
  • NP:N478S
  • NP:I517T
  • NP:R525T
  • NP:I527T
  • NP:P531T
  • NP:H534R
  • NP:T631I
  • NP:Q637R
  • NP:S644P
  • NP:E708D
  • NP:K728R

    • VP24

  • VP24:M212K

    • VP35

  • VP35:A12V
  • VP35:S41N
  • VP35:T68M
  • VP35:N204D

    • VP40

  • VP40:V20A
  • VP40:I324V

    • sGP

  • sGP:A82V
  • sGP:T262A
  • sGP:E314D
  • sGP:G331R
  • sGP:L336M

    • ssGP

  • ssGP:A82V
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None

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