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PPD_0003BDR.1

Display Name: Democratic_Republic_of_the_Congo/PPD_0003BDR.1/2018-12-26
M. Akonga-Okito, A. Amuri-Aziza, N. Bisento-Ngafa, N. Di Paola, M. M. Diagne, M. Faye, E. Kinganda-Lusamaki, M. Matondo-Kuamfumu, F. Muyembe-Mawete, B. Nsunda-Makanzu, M. Pauthner, C. B. Pratt, K. Prieto, B. White & P. Mbala-Kingebeni

Submission details

Submission ID
MW806650.1
Submitting group
Date submitted
2025-07-04 13:09:34 UTC
Date released
2025-07-04 13:20:08 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:09insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, College of Public Health

Alignment and QC metrics

Completeness
98.25%
Length
18813
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
6
Total SNPs
288
Total unknown nucs
180

Sample details

Earliest release date
2021-05-03
Collection country
Democratic Republic of the Congo
Collection date
2018-12-26
Collection date (lower bound)
2018-12-26
Collection date (upper bound)
2018-12-26
Isolate name
Ebolavirus/H.sapiens-wt/COD/2018/Ituri-BTB2341

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2021-05-03
NCBI update date
2021-05-03

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • A214G
  • C230T
  • T246C
  • C339T
  • G381A
  • A388G
  • T445A
  • A491G
  • C493T
  • G500A
  • G507A
  • A547G
  • C559T
  • A607C
  • A619G
  • C751T
  • C775T
  • A931C
    • Deletions
    18404
    Insertions
    ins_18632:TCCTTA

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:V3A
  • GP:V75A
  • GP:V310A
  • GP:L368P
  • GP:S377P
  • GP:S422P
  • GP:P429A
  • GP:A432T
  • GP:T435A
  • GP:F443L
  • GP:E457K
  • GP:K478R
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:Q133H
  • L:S428N
  • L:S1383N
  • L:F1610L
  • L:R1657G
  • L:N1739S
  • L:F1742S
  • L:G1753S
  • L:I1824M
  • L:R1914K
  • L:T2028M
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:S13N
  • NP:V459I
  • NP:N478S
  • NP:T503I
  • NP:I517T
  • NP:T522A
  • NP:I527T
  • NP:A540D
  • NP:N547H
  • NP:D548N
  • NP:S644P

    • VP24

  • VP24:K15Q
  • VP24:T34A
  • VP24:K163Q
  • VP24:M212K

    • VP35

  • VP35:Y55H
  • VP35:A56V
  • VP35:I78M
  • VP35:A180T
  • VP35:N204D

    • VP40

  • VP40:G29S
  • VP40:T255A
  • VP40:T277N

    • sGP

  • sGP:V3A
  • sGP:V75A
  • sGP:G331V

    • ssGP

  • ssGP:V3A
  • ssGP:V75A
    • Deletions
    None
    Insertions
    None

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