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PPD_0006XZS.1

Display Name: Japan/PPD_0006XZS.1/2025-04-15
K. Kuroki & R. Kumagai

Sample details

Collection date
2025-04-15
Country
Japan
Admin level 1
Tokyo
Isolate name
hMPV_B2/N/F25-107/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1090
# of SNPs
165
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
Frame shifts
N:377-395(nt:1168-1224)
Completeness
8.16%

Submission details

Submission ID
LC880193.1
Submitting group
Date submitted
2025-09-17 10:45:39 UTC
Date released
2025-09-17 11:15:12 UTC
Earliest release date
2025-07-04

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G126A
  • T129C
  • A132T
  • C150T
  • A162G
  • A168G
  • G177T
  • A189G
  • G195T
  • T198C
  • G199A
  • C213T
  • A231G
  • A237G
  • A250T
  • A255G
  • T259C
  • G270A
    • Deletions
    None
    Insertions
    ins_1167:A

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    N

  • N:A54T
  • N:S71C
  • N:R96K
  • N:I103G
  • N:N106S
  • N:D110E
  • N:A136V
  • N:M201V
  • N:D212E
  • N:H220Y
  • N:K356R
    • Deletions
    None
    Insertions
    None

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