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PPD_0006Y3J.1

Display Name: Japan/PPD_0006Y3J.1/2025-04-26
K. Kuroki & R. Kumagai

Sample details

Collection date
2025-04-26
Country
Japan
Admin level 1
Tokyo
Isolate name
hMPV_A2b2/N/F25-107/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A2.2.2

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
996
# of SNPs
106
# of inserted bases
11
# of deleted bases
104
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
3
Frame shifts
N:147-235(nt:477-744),N:243-269(nt:766-846),N:275-287(nt:862-900)
Completeness
8.16%

Submission details

Submission ID
LC880197.1
Submitting group
Date submitted
2025-09-17 10:45:39 UTC
Date released
2025-09-17 11:15:12 UTC
Earliest release date
2025-07-04

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G126A
  • T129C
  • T138A
  • G180A
  • G195A
  • A204G
  • G208A
  • C213T
  • T249C
  • T259C
  • A264G
  • G276A
  • T285C
  • G288A
  • G291A
  • C309T
  • T314C
  • C318T
    • Deletions
    475, 476, 652-654, 666-676, 685-724, 847, 848, 877-881, 901-941
    Insertions
    ins_744:CT, ins_765:ATTCGTTA, ins_861:G

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    N

  • N:A57T
  • N:V92A
  • N:I103V
  • N:S238K
  • N:K239Q
  • N:L273N
  • N:G274M
    • Deletions
    N:146, N:270, N:288-302
    Insertions
    None

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