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PPD_0006YLH.1

Display Name: Japan/PPD_0006YLH.1/2025-04-22
K. Kuroki & R. Kumagai

Sample details

Collection date
2025-04-22
Country
Japan
Admin level 1
Tokyo
Isolate name
hMPV_B2/G/F25-265/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
773
# of SNPs
333
# of inserted bases
16
# of deleted bases
19
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
2
Frame shifts
G:149-161(nt:6691-6729),G:213-218(nt:6882-6900)
Completeness
5.81%

Submission details

Submission ID
LC880214.1
Submitting group
Date submitted
2025-09-17 10:45:39 UTC
Date released
2025-09-17 11:15:12 UTC
Earliest release date
2025-07-04

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C6339T
  • T6340A
  • T6342A
  • G6346A
  • C6351T
  • A6354T
  • A6358T
  • T6363A
  • A6364G
  • C6365T
  • G6369A
  • T6375G
  • C6378A
  • C6381T
  • A6385G
  • C6387T
  • A6389T
  • C6391T
    • Deletions
    6880, 6881, 6901, 6977-6984, 7017-7024
    Insertions
    ins_6690:A, ins_6699:AGCTAACCGGAGC, ins_6729:C, ins_7080:T

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    G

  • G:S32T
  • G:V34I
  • G:I38L
  • G:T40V
  • G:I43M
  • G:I47V
  • G:Y48F
  • G:N52D
  • G:K54A
  • G:M55K
  • G:Q56L
  • G:T59M
  • G:S60T
  • G:E61K
  • G:S62V
  • G:H64L
  • G:H65C
  • G:T66V
    • Deletions
    G:212, G:219, G:235
    Insertions
    ins_G:141:RQT, ins_G:187:AI

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