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PPD_000B5CH.1

Display Name: Bangladesh/PPD_000B5CH.1/2025-01-04
M. Talha, Y. Karim, M. S. Alam, R. Howlader, R. Rahman, S. Khair, A. Al Faisal, A. Haque, M. N. Begum & M. Rahman

Sample details

Collection date
2025-01-04
Country
Bangladesh
Isolate name
01_3250103002_2025_Bangladesh

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
icddr, b, Virology Laboratory, Infectious Diseases Division (IDD)

INSDC

INSDC accession
NCBI release date
2025-03-16
NCBI update date
2025-03-16

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
230
# of SNPs
32
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
1.72%

Submission details

Submission ID
PV088208.1
Submitting group
Date submitted
2025-09-17 10:45:53 UTC
Date released
2025-09-17 12:02:22 UTC
Earliest release date
2025-03-16

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • A3573T
  • C3574A
  • A3579G
  • A3588G
  • G3594A
  • C3597T
  • C3609T
  • C3610T
  • A3615G
  • C3621T
  • T3624C
  • A3636G
  • G3648A
  • A3669G
  • C3681T
  • T3684A
  • A3687G
  • A3696G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:R175S
  • F:T223N
  • F:N233Y
    • Deletions
    None
    Insertions
    None

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