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PPD_000B5MY.1
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Download metadata TSV
Display Name: USA/PPD_000B5MY.1/2024-07-30
J. Paull,
K. Messer,
G. Adams,
D. Nabatanzi,
S. Dobbins,
C. Tomkins-Tinch,
G. Mboowa,
L. Luebbert,
C. Worby,
N. Wewior,
P. Samani,
K. DeRuff,
B. Blumenstiel,
G. Moreno,
A. Earl,
A. Gnirke,
B. MacInnis,
P. Sabeti,
J. Lemieux &
D. Park
Sample details
Collection date
2024-07-30
Country
USA
Admin level 1
Massachusetts
Isolate name
HMPV/human/USA/MA-Broad_MGH-21687/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B2
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
INSDC accession
PV178427.1
BioProject accession
PRJNA1052714
BioSample accession
SAMN44063462
NCBI release date
2025-03-04
NCBI update date
2025-03-04
Raw reads accession
SRR31064565
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13103
# of SNPs
2454
# of inserted bases
14
# of deleted bases
78
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
2
Frame shifts
G:149-155(nt:6691-6711),G:207-223(nt:6864-6915)
Completeness
98.63%
Submission details
Submission ID
PV178427.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:45:53 UTC
Date released
2025-09-17 12:02:22 UTC
Earliest release date
2025-03-04
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
63
A
T
70
C
A
72
G
C
78
T
G
81
A
G
105
A
A
117
G
A
120
G
G
126
A
T
129
C
A
132
C
A
141
G
C
150
T
A
162
G
A
168
G
G
177
T
A
189
G
G
195
T
Show more
Deletions
2963, 3006, 4684-4722, 6025-6027, 6109, 6110, 6196, 6210-6215, 6863, 6916, 6917, 6975-6984, 7031-7037, 7144-7147, 13188
Insertions
ins_2976:A, ins_5813:AGA, ins_6690:A, ins_6711:CA, ins_6759:GCAACC, ins_7080:T
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
L
36
Q
F:
A
61
T
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
143
T
F:
D
167
E
F:
R
175
S
F:
T
223
N
F:
N
233
Y
F:
F
258
I
F:
D
280
N
F:
V
286
I
F:
G
294
E
F:
K
296
D
Show more
G
G:
K
4
R
G:
T
10
A
G:
L
14
F
G:
R
17
K
G:
V
18
M
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
F
28
Y
G:
K
29
R
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
T
40
A
G:
I
43
M
G:
Y
48
F
G:
N
52
D
G:
K
54
A
Show more
L
L:
L
4
F
L:
N
5
C
L:
N
42
K
L:
N
65
M
L:
S
66
T
L:
I
75
V
L:
V
79
I
L:
V
89
T
L:
L
96
S
L:
T
109
S
L:
N
113
S
L:
S
123
T
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
L:
I
189
V
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
K
4
R
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
S
121
N
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
A
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
N
N:
A
54
T
N:
A
57
T
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
N
106
S
N:
D
110
E
N:
A
136
V
N:
M
201
V
N:
D
212
E
N:
H
220
Y
N:
K
356
R
N:
V
385
M
N:
S
389
N
N:
N
391
D
P
P:
L
19
I
P:
R
28
K
P:
K
29
R
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
N
44
T
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
S
65
L
P:
T
72
A
P:
K
74
S
P:
G
75
S
P:
E
81
I
Show more
SH
SH:
I
2
K
SH:
T
17
N
SH:
H
18
Q
SH:
L
19
I
SH:
D
25
N
SH:
V
30
L
SH:
V
33
A
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
S
64
L
SH:
T
66
N
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
V
80
T
SH:
T
82
I
SH:
K
83
R
Show more
Deletions
G:224, SH:175
Insertions
ins_G:137:R, ins_G:183:N, ins_SH:108:R
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