This is the main branch
X
Pathoplexus
HMPV
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PPD_000B5UJ.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PPD_000B5UJ.1/2024-12-18
J. Paull,
K. Messer,
G. Adams,
D. Nabatanzi,
S. Dobbins,
C. Tomkins-Tinch,
G. Mboowa,
L. Luebbert,
C. Worby,
N. Wewior,
P. Samani,
K. DeRuff,
B. Blumenstiel,
G. Moreno,
A. Earl,
A. Gnirke,
B. MacInnis,
P. Sabeti,
J. Lemieux &
D. Park
Sample details
Collection date
2024-12-18
Country
USA
Admin level 1
Massachusetts
Isolate name
HMPV/human/USA/MA-Broad_MGH-22926/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A2.2.2
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
INSDC accession
PV206817.1
BioProject accession
PRJNA1052714
BioSample accession
SAMN47118401
NCBI release date
2025-03-05
NCBI update date
2025-03-05
Raw reads accession
SRR32515241
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13198
# of SNPs
1064
# of inserted bases
2
# of deleted bases
49
# of ambiguous bases
3
# of unknown bases
30
# of frame shifts
1
Frame shifts
G:228-237(nt:6927-6957)
Completeness
98.97%
Submission details
Submission ID
PV206817.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:45:53 UTC
Date released
2025-09-17 12:02:22 UTC
Earliest release date
2025-03-05
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
T
24
C
A
51
G
T
70
C
A
117
G
G
126
A
T
129
C
T
138
A
G
180
A
G
195
A
A
204
G
G
208
A
C
213
T
A
243
G
T
249
C
T
259
C
A
264
G
G
276
A
T
285
C
Show more
Deletions
4692-4719, 6224, 6907-6926
Insertions
ins_6115:T, ins_7133:T
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
V
510
I
F:
K
518
R
F:
N
539
S
G
G:
T
10
A
G:
K
29
R
G:
V
34
I
G:
T
40
A
G:
L
41
M
G:
I
43
M
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
T
59
A
G:
S
69
P
G:
M
71
T
G:
S
74
N
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
I
G:
S
85
Q
Show more
L
L:
I
75
V
L:
S
132
G
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
W
390
L
L:
K
496
T
L:
T
505
A
L:
K
530
R
L:
K
538
R
L:
D
546
E
L:
G
760
D
L:
S
769
R
L:
S
895
T
L:
R
951
K
L:
A
954
T
L:
R
957
K
L:
A
960
T
Show more
M
M:
I
23
V
M:
N
66
S
M:
K
87
R
M2-1
M2-1:
V
130
I
M2-1:
E
170
D
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
N
N:
A
57
T
N:
V
92
A
N:
I
103
V
N:
H
220
Y
P
P:
G
31
S
P:
N
44
S
P:
A
59
T
P:
T
78
I
P:
K
79
R
P:
I
82
A
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
K
227
R
P:
S
239
N
P:
S
242
T
P:
T
280
L
P:
S
284
N
P:
E
286
K
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
S
68
P
SH:
K
71
E
SH:
S
74
P
SH:
N
87
D
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
P
SH:
T
135
S
SH:
T
137
I
SH:
N
139
S
SH:
K
142
R
SH:
P
151
S
Show more
Deletions
G:221-227
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue