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PPD_000B8CE.1
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Download FASTA
Download metadata TSV
Display Name: USA/PPD_000B8CE.1/2025-02-11
J. Paull,
K. Messer,
G. Adams,
D. Nabatanzi,
S. Dobbins,
C. Tomkins-Tinch,
G. Mboowa,
L. Luebbert,
C. Worby,
N. Wewior,
P. Samani,
K. DeRuff,
B. Blumenstiel,
G. Moreno,
A. Earl,
A. Gnirke,
B. MacInnis,
P. Sabeti,
J. Lemieux &
D. Park
Sample details
Collection date
2025-02-11
Country
USA
Admin level 1
Massachusetts
Isolate name
HMPV/human/USA/MA-Broad_MGH-23538/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A2.2.1
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
INSDC accession
PV484788.1
BioProject accession
PRJNA1052714
BioSample accession
SAMN47859477
NCBI release date
2025-04-14
NCBI update date
2025-04-14
Raw reads accession
SRR33051176
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13233
# of SNPs
1066
# of inserted bases
9
# of deleted bases
49
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
Frame shifts
G:227-237(nt:6923-6957)
Completeness
99.42%
Submission details
Submission ID
PV484788.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:45:53 UTC
Date released
2025-09-17 12:04:26 UTC
Earliest release date
2025-04-14
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
T
70
C
G
81
A
T
102
A
A
117
G
G
126
A
T
129
C
T
138
A
G
144
A
A
186
G
G
195
A
A
204
G
G
208
A
C
213
T
T
259
C
A
264
G
G
276
A
G
291
A
G
313
A
Show more
Deletions
4692-4719, 6224, 6903-6922
Insertions
ins_6951:T, ins_6964:A, ins_7130:G, ins_13280:TTAAAA
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
N
539
S
G
G:
T
10
A
G:
V
34
I
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
E
63
G
G:
S
69
T
G:
M
71
T
G:
S
74
I
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
I
G:
D
83
Y
G:
S
85
P
G:
T
87
I
G:
S
89
P
G:
S
90
N
Show more
L
L:
I
75
V
L:
V
79
I
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
V
331
A
L:
W
390
L
L:
T
429
N
L:
K
496
T
L:
E
540
G
L:
D
546
E
L:
V
654
I
L:
S
769
R
L:
V
772
I
L:
I
861
V
L:
R
951
K
L:
R
957
K
L:
A
960
T
Show more
M
M:
I
23
V
M:
N
66
S
M2-1
M2-1:
S
121
N
M2-1:
V
130
I
M2-1:
E
170
D
M2-1:
T
183
I
M2-2
M2-2:
E
18
D
M2-2:
H
35
Q
M2-2:
D
37
E
M2-2:
S
49
F
M2-2:
E
59
K
N
N:
A
57
T
N:
V
92
T
N:
I
103
V
P
P:
G
31
S
P:
V
46
I
P:
A
59
T
P:
P
64
L
P:
T
78
I
P:
I
82
V
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
S
239
N
P:
S
242
T
P:
P
277
L
P:
T
280
I
P:
D
282
E
P:
S
284
N
SH
SH:
S
9
N
SH:
K
14
E
SH:
V
33
A
SH:
L
44
F
SH:
K
71
E
SH:
S
73
L
SH:
S
74
P
SH:
N
87
D
SH:
Q
92
H
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
L
SH:
T
135
S
SH:
K
136
E
SH:
T
137
I
Show more
Deletions
G:220-226
Insertions
None
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