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PPD_000EF5F.1

Display Name: Bangladesh/PPD_000EF5F.1/2024-11-02
M. Talha, Y. Karim, M. S. Alam, R. Howlader, R. Rahman, S. Khair, A. Al Faisal, A. Haque, M. N. Begum & M. Rahman

Submission details

Submission ID
PV088184.1
Submitting group
Date submitted
2025-07-03 10:52:22 UTC
Date released
2025-07-03 11:50:31 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 10:52insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
icddr, b, Virology Laboratory, Infectious Diseases Division (IDD)

Alignment and QC metrics

Completeness
3.10%
Length
414
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
55
Total unknown nucs
0

Sample details

Earliest release date
2025-03-16
Collection country
Bangladesh
Collection date
2024-11-02
Collection date (lower bound)
2024-11-02
Collection date (upper bound)
2024-11-02
Isolate name
01_3241111001_2024_Bangladesh

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-03-16
NCBI update date
2025-03-16

Lineage

Lineage
B2

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C537T
  • C564A
  • A570G
  • G573T
  • C585T
  • C591T
  • G597A
  • T600C
  • C604A
  • T606A
  • A609G
  • A621G
  • C624T
  • G627A
  • A639G
  • A640G
  • G642A
  • C645T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    N

  • N:M201V
  • N:D212E
  • N:H220Y
    • Deletions
    None
    Insertions
    None

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