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PPD_000EFWY.1

Display Name: Bangladesh/PPD_000EFWY.1/2025-01-07
M. Talha, Y. Karim, M. S. Alam, R. Howlader, R. Rahman, S. Khair, A. Al Faisal, A. Haque, M. N. Begum & M. Rahman

Submission details

Submission ID
PV088209.1
Submitting group
Date submitted
2025-07-03 10:52:22 UTC
Date released
2025-07-03 11:50:31 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 10:52insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
icddr, b, Virology Laboratory, Infectious Diseases Division (IDD)

Alignment and QC metrics

Completeness
1.70%
Length
227
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
22
Total unknown nucs
0

Sample details

Earliest release date
2025-03-16
Collection country
Bangladesh
Collection date
2025-01-07
Collection date (lower bound)
2025-01-07
Collection date (upper bound)
2025-01-07
Isolate name
03_1250111007_2025_Bangladesh

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-03-16
NCBI update date
2025-03-16

Lineage

Lineage
B1

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C3574A
  • A3587G
  • A3588G
  • G3594A
  • C3597T
  • C3609T
  • A3615G
  • C3621T
  • T3624C
  • G3648A
  • C3651T
  • A3669G
  • C3681T
  • T3684A
  • T3705A
  • A3720T
  • A3732G
  • T3744A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:R175S
  • F:K179R
  • F:N233Y
    • Deletions
    None
    Insertions
    None

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