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PPD_000EK93.1

Display Name: Guinea/PPD_000EK93.1/2021
A. K. Keita, F. R. Koundouno, M. Faye, A. Dux, J. Hinzmann, H. Diallo, A. Ayouba, F. Le Marcis, B. Soropogui, K. Ifono, M. M. Diagne, M. S. Sow, J. A. Bore, S. Calvignac-Spencer, N. Vidal, J. Camara, M. B. Keita, A. Renevey, A. Diallo, A. K. Soumah, S. L. Millimono, A. Mari-Saez, M. Diop, A. Dore, ..., K. Prieto

Sample details

Collection date
2021
Country
Guinea
Admin level 1
Nzerekore

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur de Dakar, Virology Department

INSDC

INSDC accession
NCBI release date
2021-09-08
NCBI update date
2021-10-01

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18830
# of SNPs
573
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
115
# of frame shifts
0
Completeness
98.71%

Submission details

Submission ID
MZ605320.1
Submitting group
Date submitted
2025-09-17 10:46:14 UTC
Date released
2025-09-17 10:59:25 UTC
Earliest release date
2021-09-08

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • C127T
  • C149T
  • A155C
  • A182G
  • A187G
  • C230T
  • T236C
  • A257G
  • C261T
  • G263A
  • A295C
  • C356T
  • G360A
  • T369C
  • T377C
  • T378C
  • G381A
  • T385C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:A82V
  • GP:T262A
  • GP:V310A
  • GP:A315P
  • GP:G331E
  • GP:T336N
  • GP:E359K
  • GP:S377P
  • GP:L378P
  • GP:P382T
  • GP:E405G
  • GP:T411A
  • GP:S422P
  • GP:P430L
  • GP:T441A
  • GP:F443S
  • GP:P446L
  • GP:H455Y
  • GP:A503V
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:F150L
  • L:M197L
  • L:A215T
  • L:I259V
  • L:M337I
  • L:Q346H
  • L:D692N
  • L:D759G
  • L:L888S
  • L:F1142V
  • L:S1383N
  • L:R1405Q
  • L:Y1594H
  • L:Q1607H
  • L:S1615N
  • L:S1645N

    • NP

  • NP:I8V
  • NP:A11T
  • NP:R111C
  • NP:K128R
  • NP:S465G
  • NP:N478S
  • NP:I517T
  • NP:R525T
  • NP:I527T
  • NP:P531T
  • NP:H534R
  • NP:T631I
  • NP:Q637R
  • NP:S644P
  • NP:E708D
  • NP:K728R

    • VP24

  • VP24:M212K

    • VP35

  • VP35:A12V
  • VP35:S41N
  • VP35:T68M
  • VP35:N204D

    • VP40

  • VP40:V20A
  • VP40:I324V

    • sGP

  • sGP:A82V
  • sGP:T262A
  • sGP:E314D
  • sGP:G331R
  • sGP:L336M

    • ssGP

  • ssGP:A82V
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None

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