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PPD_000ELTZ.1

Display Name: Democratic_Republic_of_the_Congo/PPD_000ELTZ.1/2020-06-18
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J. C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G. N. Soke, P. N. Fonjungo, J. O. Otshudiema, ..., P. Mbala

Sample details

Collection date
2020-06-18
Country
Democratic Republic of the Congo
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Tumba-RDCEQT000199

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

INSDC accession
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18574
# of SNPs
199
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
2991
# of frame shifts
0
Completeness
82.19%

Submission details

Submission ID
OR084847.1
Submitting group
Date submitted
2025-09-17 10:46:14 UTC
Date released
2025-09-17 10:59:25 UTC
Earliest release date
2024-03-11

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • G381A
  • A388G
  • G413A
  • T463C
  • A491G
  • G500A
  • T542C
  • A619G
  • A622G
  • C646T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • C1432T
  • C1462T
  • T1540C
  • A1687G
    • Deletions
    None
    Insertions
    ins_2819:T

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:P126L
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:L287F
  • L:P507L
  • L:I1183L
  • L:F1610L
  • L:I1704T
  • L:F1742S
  • L:H1745Y
  • L:I1757T
  • L:D1888N
  • L:C2050Y
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:S598P
  • NP:S644P

    • VP24

  • VP24:A99V
  • VP24:M212K

    • VP30

  • VP30:A131V

    • VP35

  • VP35:N204D

    • sGP

  • sGP:P126L

    • ssGP

  • ssGP:P126L
    • Deletions
    None
    Insertions
    None

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