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PPD_000EP2D.1

Display Name: Democratic_Republic_of_the_Congo/PPD_000EP2D.1/2020-06-29
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J. C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G. N. Soke, P. N. Fonjungo, J. O. Otshudiema, ..., P. Mbala

Sample details

Collection date
2020-06-29
Country
Democratic Republic of the Congo
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT003019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

INSDC accession
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18531
# of SNPs
215
# of inserted bases
0
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
2991
# of frame shifts
0
Completeness
81.97%

Submission details

Submission ID
OR084922.1
Submitting group
Date submitted
2025-09-17 10:46:14 UTC
Date released
2025-09-17 10:59:56 UTC
Earliest release date
2024-03-11

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • G360T
  • G381A
  • A388G
  • A491G
  • G500A
  • A619G
  • A622G
  • C856T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • T1540C
  • T1916C
  • C1945T
  • G1996A
  • T2019C
  • T2049C
    • Deletions
    18619
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:A1517V
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:D1888N

    • NP

  • NP:I8V
  • NP:A11T
  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

    • VP24

  • VP24:M212K

    • VP35

  • VP35:D18N
  • VP35:N204D

    • VP40

  • VP40:A202V
    • Deletions
    None
    Insertions
    None

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