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PPD_000HZLT.1

Japan/PPD_000HZLT.1/2025-04-28
K. Kuroki & R. Kumagai

Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Sample details

Collection date
2025-04-28
Sampling location
Japan (Tokyo)
Isolate name
hMPV_B2/G/F25-202/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:11insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host

Submission details

Submission ID
LC880211.1
Submitting group
Date submitted
2026-04-11 16:10:10 UTC
Date released
2026-04-11 17:34:51 UTC
Earliest release date
2025-07-04

Alignment and QC

Length
772 (5.81%)
# of SNPs
328
# of inserted bases
18
# of deleted bases
22
# of frame shifts
2
Frame shifts
G:149-161(nt:6691-6729),G:207-224(nt:6864-6918)

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C6339T
  • T6340A
  • T6342A
  • G6346A
  • C6351T
  • A6354T
  • A6358T
  • T6363A
  • A6364G
  • C6365T
  • G6369A
  • T6375G
  • C6378A
  • C6381T
  • A6385G
  • C6387T
  • A6389T
  • C6391T
Deletions

6863, 6919, 6920, 6975-6984, 7009-7015, 7030, 7031
Insertions

ins_6690:A, ins_6699:AGCTAATCGGAGC, ins_6729:C, ins_7065:TT, ins_7080:T

Amino acid substitutions

Substitutions called relative to the NC_039199.1 reference

Substitutions

G

  • G:S32T
  • G:V34I
  • G:I38L
  • G:T40V
  • G:I43M
  • G:I47V
  • G:Y48F
  • G:N52D
  • G:K54A
  • G:M55K
  • G:Q56L
  • G:T59M
  • G:S60T
  • G:E61K
  • G:S62V
  • G:H64P
  • G:H65C
  • G:T66V
Deletions

G

G:225, G:235
Insertions

G

ins_G:141:RQT, ins_G:187:AI

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