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PPD_000JYLS.1

Display Name: Japan/PPD_000JYLS.1/2025-04-22
K. Kuroki & R. Kumagai

Sample details

Collection date
2025-04-22
Country
Japan
Admin level 1
Tokyo
Isolate name
hMPV_A2b1/N/F25-154/Tokyo/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:42insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A2.2.1

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1087
Completeness
8.16%
# of SNPs
89
# of inserted bases
0
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
# of stop codons
0
Frame shifts
N:368-395(nt:1140-1224)

Submission details

Submission ID
LC880196.1
Submitting group
Date submitted
2025-11-25 14:42:34 UTC
Date released
2025-11-25 15:01:25 UTC
Earliest release date
2025-07-04

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G126A
  • T129C
  • T138A
  • G144A
  • A186G
  • G195A
  • A204G
  • G208A
  • C213T
  • T259C
  • A264G
  • T265A
  • G276A
  • G288A
  • G291A
  • G313A
  • T314C
  • C318T
    • Deletions
    1138, 1139
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    N

  • N:A57T
  • N:S76T
  • N:V92T
  • N:I103V
    • Deletions
    N:367
    Insertions
    None

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