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PPD_000NXMH.1
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Download FASTA
Download metadata TSV
Display Name: South_Africa/PPD_000NXMH.1/2025-10-08
J. Maritz,
D. Goedhals,
J. Pekeur,
T. Maponga,
M. Claassen,
T. Stander,
G. van Zyl,
W. Preiser,
L. M. Hofstra,
L. Chabuka,
K. W. Liedeman,
S. De Villiers,
V. Wentzel,
L. Singh,
T. Ramakutoane,
H. Tegally,
E. Wilkinson &
T. de Oliveira
Sample details
Collection date
2025-10-08
Country
South Africa
Admin level 1
Western Cape; Cape Town; Cape Town
Isolate name
hMPV/B/SouthAfrica/PATH-CERI-C071108/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-23 16:50
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B1
Authors
Author affiliations
S, Cape Town, Western Cape
INSDC
INSDC accession
OZ412859.1
BioProject accession
PRJEB108342
BioSample accession
SAMEA121577092
NCBI release date
2026-02-17
NCBI update date
2026-02-18
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13155
Completeness
97.01%
# of SNPs
2331
# of inserted bases
34
# of deleted bases
60
# of ambiguous bases
0
# of unknown bases
230
# of frame shifts
2
# of stop codons
3
Frame shifts
G:150-160(nt:6694-6725),G:216-237(nt:6890-6957)
Stop Codons
SH:177,SH:179,SH:180
Submission details
Submission ID
OZ412859.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-23 16:49:20 UTC
Date released
2026-02-23 18:28:29 UTC
Earliest release date
2026-02-17
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
11
A
A
12
G
G
34
A
G
36
A
G
63
A
T
70
C
A
72
G
G
81
A
G
105
A
G
126
A
T
129
C
C
150
T
G
177
T
G
195
T
T
198
C
G
199
A
T
207
C
G
208
A
Show more
Deletions
2934, 3009, 4684-4722, 6053, 6889, 6981-6983, 6991-6999, 7022, 7023, 12983-12985
Insertions
ins_2981:C, ins_5470:TAAAAATAA, ins_5813:AGA, ins_6693:GA, ins_6725:GGGGAAGAGGAAAAGA, ins_6945:AT, ins_6965:C
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
A
61
T
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
143
Q
F:
D
167
E
F:
R
175
S
F:
K
179
R
F:
N
233
Y
F:
F
258
I
F:
V
286
I
F:
G
294
E
F:
K
296
N
F:
Q
312
K
F:
K
348
R
Show more
G
G:
K
4
R
G:
T
10
A
G:
M
13
I
G:
L
14
F
G:
R
17
K
G:
V
18
I
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
K
26
R
G:
F
28
Y
G:
K
29
R
G:
N
30
Y
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
I
43
M
G:
Y
48
F
Show more
L
L:
I
50
V
L:
I
55
V
L:
K
61
R
L:
N
65
M
L:
S
66
T
L:
I
75
V
L:
V
89
M
L:
T
109
S
L:
I
115
M
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
L:
I
189
V
L:
S
228
N
L:
E
231
K
L:
I
245
M
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
T
156
I
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
A
5
T
M2-1:
E
20
D
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
V
108
T
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-1:
S
173
P
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
S
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
M2-2:
A
68
T
N
N:
A
54
T
N:
A
57
T
N:
I
67
M
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
N
106
S
N:
D
110
E
N:
A
136
V
N:
M
201
V
N:
D
212
E
N:
H
220
Y
N:
M
258
L
N:
A
280
S
N:
K
356
R
N:
V
385
M
N:
D
387
G
N:
S
389
N
N:
N
391
D
P
P:
L
19
I
P:
R
28
K
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
P
64
L
P:
S
65
L
P:
T
72
A
P:
K
74
N
P:
G
75
S
P:
A
77
T
P:
T
80
I
Show more
SH
SH:
I
2
K
SH:
K
14
E
SH:
T
17
N
SH:
H
18
Q
SH:
I
22
T
SH:
D
25
K
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
T
66
N
SH:
D
72
V
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
V
80
T
SH:
T
82
I
SH:
K
83
R
SH:
T
84
P
Show more
Deletions
G:215, L:1940
Insertions
ins_G:143:ITQT, ins_G:189:TT, ins_SH:107:D
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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