This is the main branch

PPD_000SLD3.1

Display Name: USA/PPD_000SLD3.1/2002-08-07
Grubaugh, N.; Matteson, N.; Gangavarupa, K.; Neitzel, D.; Andersen, K.

Submission details

Submission ID
OQ721635.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-02 07:54:11 UTC
Date released
2025-04-02 08:12:13 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-02 07:54insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
PRJNA472981
INSDC accession
OQ721635.1
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment and QC metrics

Completeness
93.41%
Length
10302
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
31
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Nicollet, Minnesota
Collection country
USA
Collection date
2002-08-07
Collection date (lower bound)
2002-08-07
Collection date (upper bound)
2002-08-07

Host

Host name scientific
Corvus
Host taxon id
30420

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C3570T
  • T3696C
  • C4107T
  • A4146G
  • C4272T
  • C4288T
  • A4437G
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • C6138T
  • A6204G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2B

  • NS2B:L24F

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue