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PPD_000SMNH.1

Display Name: Indonesia/PPD_000SMNH.1/2023-02-21
Rieu, M.-S.; Ji, S.-R.; Byun, H.-R.; Han, S.-W.; Choi, C.-Y.; Nam, H.-Y.; Seo, S.-G.; Chae, J.-S.

Submission details

Submission ID
PP334106.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-27 14:04:25 UTC
Date released
2025-03-27 14:18:42 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-27 14:04insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Seoul National University, Labaratory of Veterinary Internal Medicine

Alignment and QC metrics S

Completeness S
15.55%
Length S
260
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
40
Total unknown nucs S
0

Sample details

Earliest release date
2024-08-15
Collection country
Indonesia
Collection date
2023-02-21
Collection date (lower bound)
2023-02-21
Collection date (upper bound)
2023-02-21
Isolate name
IN11T16

Host

Host name scientific
Bos taurus
Host taxon id
9913

INSDC

INSDC accession S
PP334106.1
NCBI release date
2024-08-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G292A
  • S:C295T
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A379G
  • S:G381A
  • S:T382C
  • S:A386G
  • S:A394G
  • S:C400T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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