This is the main branch
X
Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
Mpox Virus
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_000SPT5.1
Download
Download FASTA
Download metadata TSV
Display Name: North_Macedonia/PPD_000SPT5.1/2023-01-01
Bosevska,
G.; Emmerich,
P.; von Possel,
R.; Toth,
E. G.; Osmani,
D.; Cadar,
D.
Submission details
Submission ID
PP963971.1.L/PP963972.1.M/PP963973.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-27 14:04:25 UTC
Date released
2025-03-27 14:19:12 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-27 14:04
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Bernhard Nocht Institute for Tropical Medicine, Virus Genomics and Evolution
Alignment and QC metrics L
Completeness L
68.06%
Length L
11902
Total ambiguous nucs L
0
Total deleted nucs L
19
Total frame shifts L
0
Total inserted nucs L
2
Total SNPs L
863
Total unknown nucs L
3678
Alignment and QC metrics M
Completeness M
82.30%
Length M
5204
Total ambiguous nucs M
0
Total deleted nucs M
62
Total frame shifts M
0
Total inserted nucs M
3
Total SNPs M
875
Total unknown nucs M
847
Alignment and QC metrics S
Completeness S
58.55%
Length S
1480
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
136
Total unknown nucs S
501
Sample details
Earliest release date
2024-07-06
Collection country
North Macedonia
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
Skopje-2795
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PP963971.1
INSDC accession M
PP963972.1
INSDC accession S
PP963973.1
NCBI release date
2024-07-06
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
229
C
L:
A
240
C
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
Show more
M
M:
T
40
C
M:
G
50
A
M:
A
51
G
M:
A
61
T
M:
T
67
C
M:
T
68
C
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
C
85
T
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
Show more
Deletions
L:50-53, L:59-73, M:318-323, M:5147-5155, M:5199-5215, M:5220, M:5223, M:5224, M:5232-5235, M:5239-5255, M:5281-5286
Insertions
ins_M:335:ACA, ins_L:11928:CG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
P
GPC:
E
26
A
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
GPC:
N
41
S
GPC:
P
42
Q
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
G
335
W
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
I
131
M
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
S
232
F
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC:77, GPC:105
Insertions
ins_GPC:114:T
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue