This is the main branch

PPD_000SPXX.1

Display Name: Portugal/PPD_000SPXX.1/2024-01-01
Ze-Ze, L.; Nunes, C.; Sousa, M.; de Sousa, R.; Gomes, C.; Santos, A. S.; Alexandre, R. T.; Amaro, F.; Loza, T.; Blanco, M.; Alves, M. J.

Submission details

Submission ID
PQ200212.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-27 14:04:25 UTC
Date released
2025-03-27 14:19:12 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-27 14:04insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Institute of Health Dr. Ricardo Jorge P.I. (INSA), Center for Vectors and Infectious Disease Research (CEVDI)

Alignment and QC metrics S

Completeness S
7.30%
Length S
122
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
7
Total unknown nucs S
0

Sample details

Earliest release date
2024-12-15
Collection country
Portugal
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-15

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
PQ200212.1
NCBI release date
2024-12-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G47C
  • S:A50G
  • S:G54A
  • S:G67A
  • S:G99A
  • S:G100A
  • S:A121G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue