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PPD_000SRND.1

Display Name: Cote_d'Ivoire/PPD_000SRND.1/2022-11-01
Hellhammer, F.; Becker, S. C.

Submission details

Submission ID
PV246043.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-27 14:04:25 UTC
Date released
2025-03-27 14:19:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-27 14:04insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
University of Veterinary Medicine Hannover, Institute for Parasitology

Alignment and QC metrics S

Completeness S
20.75%
Frame shifts S
NP:468-483(nt:1457-1504)
Length S
139
Total ambiguous nucs S
0
Total deleted nucs S
208
Total frame shifts S
1
Total inserted nucs S
0
Total SNPs S
2
Total unknown nucs S
0

Sample details

Earliest release date
2025-03-25
Collection country
Cote d'Ivoire
Collection date
2022-11-01
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-01
Isolate name
Z56

INSDC

INSDC accession S
PV246043.1
NCBI release date
2025-03-25

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T1204C
  • S:T1243C
    • Deletions
    S:1249-1456
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    NP:399-467
    Insertions
    None

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