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PPD_0010USL.1

Display Name: USA/PPD_0010USL.1/2022-09-01
Gigante, C. M.; Benton, C.; Zhao, H.; Batra, D.; Hetrick, E. E.; Howard, D. T.; Kovar, L.; Seabolt, M. H.; Morrison, S. S.; Desch, M.; Knipe, K.; Weigand, M. R.; Cintron, R.; Sheth, M.; Burgin, A.; Burroughs, M.; Lee, J.; Wilkins, K.; McCollum, A.; Hutson, C.; Davidson, W.; Rao, A.; Bonner, K. O.; Li, Y.

Submission details

Submission ID
OQ557945.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-02 08:03:12 UTC
Date released
2025-04-02 08:42:07 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-02 08:04insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
CDC, DHCPP-PRB

INSDC

Bioproject accession
PRJNA849962
Biosample accession
SAMN33554502
INSDC accession
OQ557945.1
Raw reads accession
SRR23675408
NCBI release date
2023-03-08
NCBI update date
2023-03-08

Clade & Lineage

Clade
IIb
Lineage
B.1
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
100.00%
Length
197244
Total ambiguous nucs
0
Total deleted nucs
33
Total frame shifts
0
Total inserted nucs
68
Total SNPs
79
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-03-08
Collection subdivision level 1
NH
Collection country
USA
Collection date
2022-09
Collection date (lower bound)
2022-09-01
Collection date (upper bound)
2022-09-30
Isolate name
MPXV_USA_2022_NH0001

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G740A
  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3626T
  • C3818T
  • C5520T
  • C7771T
  • G14000T
  • G15428A
  • A18769G
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
    • Deletions
    607-609, 133177-133186, 150586-150602, 196615-196617
    Insertions
    ins_173317:ATATATATATAT, ins_192403:NNNNNNNNNNNNNNNN, ins_179076:NNNNNNNNN, ins_133102:TTTTTTTTTTTTTTT, ins_4806:NNNNNNNNNNNNNNNN

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N
  • OPG003:D328N

    • OPG015

  • OPG015:D213N

    • OPG025

  • OPG025:A423D

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG065

  • OPG065:R28C

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG163

  • OPG163:R75K

    • OPG167

  • OPG167:S79L

    • OPG176

  • OPG176:H221Y

    • OPG193

  • OPG193:L263F

    • OPG204

  • OPG204:D87N
  • OPG204:S237L

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None

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