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PPD_00118YS.1

Display Name: USA/PPD_00118YS.1/2016-08-17
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Submission details

Submission ID
OZ201868.1
Submitting group
Date submitted
2025-07-16 15:05:37 UTC
Date released
2025-07-16 15:29:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

BioProject accession
BioSample accession
INSDC accession
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment and QC metrics

Completeness
98.96%
Length
10917
Total ambiguous nucs
3
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
81
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-08-17
Collection date (lower bound)
2016-08-17
Collection date (upper bound)
2016-08-17
Isolate name
SM62G-8-17-Cxp-2

Host

Host name - scientific
Culex pipiens
Host taxon ID

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G342A
  • A630G
  • T1150C
  • A1311G
  • A1401G
  • T1442C
  • C1465T
  • G1545A
  • T1965C
  • A2097C
  • C2371T
  • C2466T
  • T2841C
  • C2991T
  • T3021C
  • T3138C
  • C3504T
  • C3680T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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