This is the main branch

PPD_0011JBR.1

Display Name: Austria/PPD_0011JBR.1/2024-08-01
D. M. Florian, S. W. Aberle & J. V. Camp

Submission details

Submission ID
PQ785891.1
Submitting group
Date submitted
2025-07-04 13:10:52 UTC
Date released
2025-07-04 13:36:47 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Medical University of Vienna, Center for Virology

Alignment and QC metrics

Completeness
13.29%
Length
1486
Total ambiguous nucs
0
Total deleted nucs
13
Total frame shifts
0
Total inserted nucs
33
Total SNPs
289
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-01-08
Collection country
Austria
Collection date
2024-08-01
Collection date (lower bound)
2024-08-01
Collection date (upper bound)
2024-08-01
Isolate name
Austria/MUW1745889/2024

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-01-08
NCBI update date
2025-01-08

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • G9189A
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
    • Deletions
    10421, 10467-10470, 10487-10494
    Insertions
    ins_10408:TGTATTGAGT, ins_10461:AG, ins_10501:T, ins_10452:AGA, ins_10427:G, ins_10483:GTT, ins_10417:GTTGTAGTGTTTA

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue