This is the main branch

PPD_0011M9S.1

Display Name: USA/PPD_0011M9S.1/2022-08-22
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Submission details

Submission ID
PV126607.1
Submitting group
Date submitted
2025-07-16 15:05:37 UTC
Date released
2025-07-16 15:32:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

Alignment and QC metrics

Completeness
97.62%
Length
10401
Total ambiguous nucs
0
Total deleted nucs
368
Total frame shifts
0
Total inserted nucs
3
Total SNPs
129
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-04
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2022-08-22
Collection date (lower bound)
2022-08-22
Collection date (upper bound)
2022-08-22
Isolate name
22_3413

Host

Host name - scientific
Accipiter cooperii
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-04
NCBI update date
2025-06-04

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T348C
  • A379G
  • C435T
  • C450T
  • A630G
  • G741A
  • G813A
  • T928C
  • T1014C
  • C1089T
  • T1233G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1776C
  • T1932C
    • Deletions
    10398-10405, 10414-10418, 10426-10434, 10439-10498, 10505-10513, 10521-10532, 10545-10576, 10589-10595, 10602-10629, 10649-10668, 10681-10858
    Insertions
    ins_10421:G, ins_10644:TG

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:M29V

    • NS2A

  • NS2A:L95F
  • NS2A:R188K

    • NS3

  • NS3:T27A
  • NS3:H559Y

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:I95V

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue