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PPD_0011MJ7.1

Display Name: USA/PPD_0011MJ7.1/2022-09-29
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Submission details

Submission ID
PV126616.1
Submitting group
Date submitted
2025-07-16 15:05:37 UTC
Date released
2025-07-16 15:32:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

Alignment and QC metrics

Completeness
95.31%
Length
10401
Total ambiguous nucs
0
Total deleted nucs
123
Total frame shifts
0
Total inserted nucs
12
Total SNPs
120
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-04
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2022-09-29
Collection date (lower bound)
2022-09-29
Collection date (upper bound)
2022-09-29
Isolate name
22_3904

Host

Host name - scientific
Buteo jamaicensis
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-04
NCBI update date
2025-06-04

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C472T
  • T477C
  • A630G
  • C870T
  • A1401G
  • T1442C
  • C1465T
  • T1800C
  • T1965C
  • A2097C
  • C2371T
  • C2406T
  • C2466T
  • C2593T
  • T3138C
  • C3300T
  • C3504T
  • C3680T
    • Deletions
    10398-10405, 10435-10442, 10447-10449, 10460, 10461, 10467-10477, 10498-10534, 10553-10606
    Insertions
    ins_10419:TCG, ins_10412:CAGA, ins_10490:GACAC

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:T25A
  • NS5:R422K

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:L3F
    • Deletions
    None
    Insertions
    None

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