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PPD_0013Y9B.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/PPD_0013Y9B.1/2020-06-24
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
Submission details
Submission ID
PP735330.1.L/PP735329.1.M/PP735328.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-16 15:07:50 UTC
Date released
2025-07-16 15:22:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-16 15:07
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
41.06%
Length L
5062
Total ambiguous nucs L
90
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
490
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
56.39%
Length M
3055
Total ambiguous nucs M
65
Total deleted nucs M
36
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
455
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
91.51%
Length S
1498
Total ambiguous nucs S
8
Total deleted nucs S
40
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
208
Total unknown nucs S
0
Sample details
Earliest release date
2024-10-26
Collection country
Turkey
Collection date
2020-06-24
Collection date (lower bound)
2020-06-24
Collection date (upper bound)
2020-06-24
Isolate name
CCHFV_8
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession L
PP735330.1
INSDC accession M
PP735329.1
INSDC accession S
PP735328.1
NCBI release date
2024-10-26
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
C
284
A
L:
C
313
T
L:
G
315
A
L:
A
316
G
L:
C
331
T
L:
C
346
T
L:
A
376
G
L:
A
385
T
L:
A
388
G
L:
T
394
C
L:
T
398
C
L:
G
400
A
Show more
M
M:
C
1237
G
M:
A
1277
G
M:
G
1280
A
M:
C
1292
T
M:
G
1301
A
M:
A
1303
G
M:
G
1304
A
M:
G
1310
A
M:
A
1311
G
M:
T
1325
C
M:
G
1331
A
M:
A
1337
G
M:
C
1352
T
M:
C
1355
T
M:
A
1358
G
M:
G
1359
A
M:
T
1367
C
M:
T
1370
C
Show more
S
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
S:
T
199
C
S:
T
211
C
Show more
Deletions
M:1239-1274, S:1542-1547, S:1564-1588, S:1593, S:1594, S:1597-1603
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
N
592
T
GPC:
V
598
T
GPC:
Y
606
F
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
V
436
I
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
R
506
K
RdRp:
A
508
I
RdRp:
V
515
I
Show more
Deletions
None
Insertions
None
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