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PPD_0013ZXZ.1

Display Name: Nigeria/PPD_0013ZXZ.1/1966
L. Peng, S. Hirsch, G. Kocher, M. Mehta & M. Holbrook

Submission details

Submission ID
PQ463982.1.L
Submitting group
Date submitted
2025-07-16 15:07:50 UTC
Date released
2025-07-16 15:23:10 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
NIH/NIAID, IRF

Alignment and QC metrics L

Completeness L
99.67%
Length L
12068
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
8
Total unknown nucs L
0

Sample details

Earliest release date
2024-11-09
Collection country
Nigeria
Collection date
1966
Collection date (lower bound)
1966-01-01
Collection date (upper bound)
1966-12-31
Isolate name
CCHFV_IRF414_L

Host

Host name - scientific
Hyalomma excavatum
Host taxon ID
Is lab host
True

INSDC

INSDC accession L
NCBI release date
2024-11-09

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G3216A
  • L:C4117A
  • L:C5054A
  • L:T5065A
  • L:C5100A
  • L:C5798T
  • L:A5830T
  • L:T5875C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
    • Deletions
    None
    Insertions
    None

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