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PPD_00140KL.1

Display Name: Armenia/PPD_00140KL.1/2022
A. Zhirova, Y. Lisitskaya, A. Volynkina, A. Manucharyan & G. Melik-Andreasyan

Submission details

Submission ID
PQ878924.1.L
Submitting group
Date submitted
2025-07-16 15:07:50 UTC
Date released
2025-07-16 15:23:10 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Alignment and QC metrics L

Completeness L
3.61%
Length L
437
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
81
Total unknown nucs L
0

Sample details

Earliest release date
2025-03-02
Collection country
Armenia
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
375-ARM-TI-2022

Host

Host name - scientific
Ixodoidea
Host taxon ID

INSDC

INSDC accession L
NCBI release date
2025-03-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A124G
  • L:A126T
  • L:T131A
  • L:C133T
  • L:A135G
  • L:T139G
  • L:T154C
  • L:T160C
  • L:T163C
  • L:G166A
  • L:G172T
  • L:G175A
  • L:G190T
  • L:C199T
  • L:T214A
  • L:G217A
  • L:T218C
  • L:C223T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:Y17F
  • RdRp:S19T
  • RdRp:N20S
  • RdRp:K53E
  • RdRp:H56R
  • RdRp:S57T
  • RdRp:Y58E
  • RdRp:Y60H
  • RdRp:S67V
  • RdRp:Y72F
  • RdRp:Q74L
  • RdRp:R80K
  • RdRp:S85D
  • RdRp:L90I
  • RdRp:L94M
  • RdRp:G113N
  • RdRp:I114V
  • RdRp:D135E
    • Deletions
    None
    Insertions
    None

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