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PPD_00188K4.1
Download
Download FASTA
Download metadata TSV
South_Africa/PPD_00188K4.1/2025-10-04
J. Maritz,
D. Goedhals,
J. Pekeur,
T. Maponga,
M. Claassen,
T. Stander,
G. van Zyl,
W. Preiser,
L. M. Hofstra,
L. Chabuka,
K. W. Liedeman,
S. De Villiers,
V. Wentzel,
L. Singh,
T. Ramakutoane,
H. Tegally,
E. Wilkinson &
T. de Oliveira
S, Cape Town, Western Cape
Sample details
Collection date
2025-10-04
Sampling location
South Africa (Western Cape; Cape Town; Cape Town)
Isolate name
hMPV/A/SouthAfrica/PATH-CERI-C071093/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-11 16:12
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A2.2.1
INSDC
INSDC accession
OZ412855.1
BioProject accession
PRJEB108342
BioSample accession
SAMEA121577086
NCBI release date
2026-02-17
NCBI update date
2026-02-18
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OZ412855.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-11 16:11:30 UTC
Date released
2026-04-11 18:15:17 UTC
Earliest release date
2026-02-17
Alignment and QC
Length
12714 (90.1%)
# of SNPs
959
# of deleted bases
48
# of unknown bases
731
# of frame shifts
1
# of stop codons
1
Frame shifts
G:235-237(nt:6947-6957)
Stop Codons
G:218
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
T
2
A
T
4
A
G
11
A
C
15
A
T
70
C
G
81
A
T
102
A
A
117
G
G
126
A
T
129
C
T
138
A
G
144
A
A
186
G
G
195
A
A
204
G
G
208
A
C
213
T
T
259
C
Show more
Deletions
4692-4719, 6224, 6898-6909, 6940-6946
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
K
386
N
F:
S
466
N
F:
T
504
S
F:
F
511
L
F:
T
517
A
F:
N
539
S
G
G:
T
10
A
G:
V
34
I
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
S
69
T
G:
M
71
T
G:
S
74
I
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
L
G:
D
83
Y
G:
S
85
P
G:
T
87
I
G:
S
89
P
G:
S
90
N
G:
P
91
S
Show more
L
L:
C
33
S
L:
L
34
F
L:
L
35
T
L:
P
38
N
L:
I
75
V
L:
V
79
I
L:
K
162
R
L:
W
390
L
L:
T
429
N
L:
K
496
T
L:
E
540
G
L:
D
546
E
L:
V
654
I
L:
S
769
R
L:
V
772
I
L:
R
951
K
L:
R
957
K
L:
A
960
T
Show more
M
M:
I
23
V
M:
N
66
S
M2-1
M2-1:
V
130
I
M2-1:
E
170
D
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
M2-2:
S
49
F
N
N:
A
57
T
N:
V
92
T
N:
I
103
V
P
P:
G
31
S
P:
V
46
I
P:
A
59
T
P:
P
64
L
P:
T
78
I
P:
I
82
V
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
S
239
N
P:
S
242
T
P:
P
277
L
P:
T
280
I
P:
D
282
E
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
K
71
E
SH:
S
73
L
SH:
S
74
P
SH:
N
87
D
SH:
Q
92
H
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
L
SH:
T
135
S
SH:
K
136
G
SH:
T
137
I
SH:
N
139
S
Show more
Deletions
G
G:224-230, G:232-234
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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