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PPD_0019WER.1

India/PPD_0019WER.1/2025-09-10
K. Sarmah, R. Hazarika, A. Sharma, R. Barman, K. Chamuah, P. Pritam & M. Teronpi

Gauhati Medical College, Microbiology

Sample details

Collection date
2025-09-10
Sampling location
India
Isolate name
CHIKV/Assam/138/2025/GMCH

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-03-10
NCBI update date
2026-03-10

Host

Host

Submission details

Submission ID
PX754443.1
Submitting group
Date submitted
2026-09-28 15:37:41 UTC
Date released
2026-09-28 15:56:08 UTC
Earliest release date
2026-03-10

Files

Annotations

Alignment and QC

Length
295 (3.86%)
# of SNPs
7
# of deleted bases
161
# of frame shifts
1
Frame shifts
E1:236-440(nt:10698-11313)

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T10254C
  • C10272T
  • A10299G
  • C10377T
  • T10434C
  • T10449C
  • T10512C
Deletions
10537-10697
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions
N/A
Deletions

E1

E1:182-235
Insertions
N/A

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