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PPD_001A1K7.1

Display Name: USA/PPD_001A1K7.1/2025-05-07
N. Rhoades, L. Batoon, S. Hallis, S. Vo, R. Flores, N. Gurfeild & J. Corrigan

Sample details

Collection date
2025-05-07
Country
USA
Admin level 1
California; San Diego County
Isolate name
VV01-25-B-01905-B-WNV-M08760-240723

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
San Diego County Public Health Lab, San Diego, CA

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-08-26
NCBI update date
2025-08-28

Host

Host taxon ID
Host name - scientific
Corvus brachyrhynchos

Alignment and QC metrics

# of stop codons
0
Length
10933
# of SNPs
107
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
2
# of unknown bases
0
# of frame shifts
0
Completeness
99.11%

Submission details

Submission ID
OZ309028.1
Submitting group
Date submitted
2025-09-17 10:46:58 UTC
Date released
2025-09-17 11:28:24 UTC
Earliest release date
2025-08-26

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
  • A2136G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • env

  • env:E150D
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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