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PPD_001AJJS.1

Display Name: Portugal/PPD_001AJJS.1/2024-09-10
D. Maroco, R. Parreira, F. A. dos Santos, A. Lopes, F. Simoes, L. Orge, S. G. Seabra, T. Fagulha, E. Brazio, A. M. Henriques, A. Duarte, M. D. Duarte & S. C. Barros

Sample details

Collection date
2024-09-10
Country
Portugal
Isolate name
WNV/18665/PT2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
National Institute for Agricultural and Veterinary Research (INIAV), Virology

INSDC

INSDC accession
NCBI release date
2025-03-01
NCBI update date
2025-03-05

Alignment and QC metrics

# of stop codons
0
Length
10986
# of SNPs
461
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
99.61%

Submission details

Submission ID
PQ660506.1
Submitting group
Date submitted
2025-09-17 10:46:58 UTC
Date released
2025-09-17 11:34:13 UTC
Earliest release date
2025-03-01

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T642C
  • G786A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:L158M

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K280R
  • NS5:L768Q

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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