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PPD_001EFWX.1

Display Name: Japan/PPD_001EFWX.1/2025-04-09
S. Watanabe, T. Motoya, M. Ueno, S. Osawa, E. Kinugawa, S. Tuboyama & A. Okubo

Sample details

Collection date
2025-04-09
Country
Japan
Admin level 1
Ibaraki
Isolate name
MVs/Ibaraki.JPN/14.25/3[B3]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
B3

Authors

Author affiliations
Laboratory of Virology; 993-2 Kasaharacho, Mito, Ibaraki 310-0852

INSDC

INSDC accession
NCBI release date
2025-05-10
NCBI update date
2025-05-10

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
450
# of SNPs
36
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
1
# of unknown bases
0
# of frame shifts
0
Completeness
2.82%

Submission details

Submission ID
LC872607.1
Submitting group
Date submitted
2025-09-17 10:47:09 UTC
Date released
2025-09-17 10:53:10 UTC
Earliest release date
2025-05-10

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • C1271T
  • T1328C
  • G1334A
  • C1337T
  • A1387G
  • A1394G
  • A1397G
  • G1398A
  • C1409T
  • A1415G
  • T1418C
  • G1434A
  • G1435A
  • T1436C
  • G1439A
  • G1441A
  • A1449C
  • T1458C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    N

  • N:N427S
  • N:G431R
  • N:G443N
  • N:G445E
  • N:Y451H
  • N:G455E
  • N:S456P
  • N:A462V
  • N:M471T
  • N:S481F
  • N:G482S
  • N:L505S
  • N:G509D
    • Deletions
    None
    Insertions
    None

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