This is the main branch

PPD_001EFXV.1

Display Name: Japan/PPD_001EFXV.1/2025-04-10
S. Watanabe, T. Motoya, M. Ueno, S. Osawa, E. Kinugawa, S. Tuboyama & A. Okubo

Sample details

Collection date
2025-04-10
Country
Japan
Admin level 1
Ibaraki
Isolate name
MVs/Ibaraki.JPN/15.25[D8]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
D8

Authors

Author affiliations
Laboratory of Virology; 993-2 Kasaharacho, Mito, Ibaraki 310-0852

INSDC

INSDC accession
NCBI release date
2025-05-10
NCBI update date
2025-05-10

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
450
# of SNPs
27
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
2.83%

Submission details

Submission ID
LC872608.1
Submitting group
Date submitted
2025-09-17 10:47:09 UTC
Date released
2025-09-17 10:53:10 UTC
Earliest release date
2025-05-10

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • C1253T
  • T1307C
  • T1310C
  • T1313C
  • T1324C
  • T1328C
  • G1334A
  • C1337T
  • C1352T
  • G1358A
  • A1394G
  • A1429G
  • G1434A
  • T1458A
  • G1482T
  • C1483T
  • C1507T
  • A1512G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    N

  • N:I406T
  • N:K441R
  • N:G443S
  • N:Y451N
  • N:A459L
  • N:P467L
  • N:T469A
  • N:M471T
  • N:G509S
  • N:R516K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue