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PPD_001P5AV.1

Display Name: Netherlands/PPD_001P5AV.1/2025-05-16
C. Maissan, J. Cremer, F. Zwagemaker, L. van de Nes-Reijnen & R. Bodewes

Sample details

Collection date
2025-05-16
Country
Netherlands
Isolate name
MVs/Gelderland.NLD/20.25[D8]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
D8

Authors

Author affiliations
National Institute for Public Health and the Environment RIVM, Centre for Infectious Disease Research, Diagnostics and laboratory Surveillance (IDS)

INSDC

INSDC accession
NCBI release date
2025-07-29
NCBI update date
2025-07-29

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15813
# of SNPs
518
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
99.49%

Submission details

Submission ID
PV870356.1
Submitting group
Date submitted
2025-09-17 10:47:26 UTC
Date released
2025-09-17 11:00:11 UTC
Earliest release date
2025-07-29

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A81G
  • A84G
  • G97A
  • G122A
  • T224C
  • A257G
  • G269A
  • G293A
  • G305A
  • C341T
  • A344G
  • G353A
  • G368A
  • C395T
  • A413G
  • T422C
  • T449C
  • C518T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:K78R
  • C:L148M
  • C:G181V

    • F

  • F:A9V
  • F:F11V

    • H

  • H:G235E
  • H:G243D
  • H:S250G
  • H:T307I
  • H:S318G
  • H:R334Q
  • H:N390I
  • H:E395G
  • H:A400T
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

    • L

  • L:P43S
  • L:A81T
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:E368A
  • L:C436W
  • L:M462I
  • L:M515L
  • L:L610S
  • L:Y613H
  • L:V618I
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A

    • N

  • N:S144F
  • N:I406T
  • N:K441R
  • N:G443S
  • N:Y451N
  • N:A459L
  • N:P467L
  • N:M471T
  • N:I475T
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:I155N
  • P:K195R
  • P:S219G
  • P:T223A
  • P:S263L
  • P:A269V
  • P:I282T
  • P:N300D
  • P:R355K
  • P:V414A
  • P:V446M
  • P:G457S
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:I155N
  • V:K195R
  • V:S219G
  • V:T223A
  • V:G237S
    • Deletions
    None
    Insertions
    None

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