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Status
PPD_001P61C.1
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Download FASTA
Download metadata TSV
Display Name: Netherlands/PPD_001P61C.1/2025-04-27
C. Ma,
J. Cremer,
F. Zwagemaker,
L. van de Nes-Reijnen &
R. Bodewes
Sample details
Collection date
2025-04-27
Country
Netherlands
Isolate name
MVs/Gelderland.NLD/17.25/2[B3]
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 10:47
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Genotype
Genotype
B3
Authors
Author affiliations
National Institute for Public Health and the Environment RIVM, Centre for Infectious Disease Research, Diagnostics and laboratory Surveillance (IDS)
INSDC
INSDC accession
PV890894.1
NCBI release date
2025-07-29
NCBI update date
2025-07-29
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
15684
# of SNPs
856
# of inserted bases
6
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
98.64%
Submission details
Submission ID
PV890894.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 10:47:26 UTC
Date released
2025-09-17 11:00:43 UTC
Earliest release date
2025-07-29
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
G
122
A
A
197
C
T
224
C
T
248
C
A
260
C
T
356
C
C
383
T
C
404
A
A
413
G
T
422
C
T
443
A
A
461
G
C
470
T
C
473
T
A
494
G
A
515
G
C
518
T
C
538
T
Show more
Deletions
None
Insertions
ins_4767:TCCCCC
Amino acid mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
C
C:
R
13
K
C:
Q
27
K
C:
R
38
T
C:
T
39
S
C:
E
40
D
C:
K
78
R
C:
S
88
P
C:
P
89
S
C:
M
129
K
C:
G
171
E
F
F:
V
7
I
F:
I
10
V
F:
T
22
A
F:
I
73
V
F:
A
105
V
F:
Q
139
R
F:
H
419
R
F:
A
512
T
H
H:
H
17
Y
H:
A
174
T
H:
N
178
T
H:
S
211
G
H:
V
220
I
H:
G
235
E
H:
S
240
N
H:
H
252
Y
H:
D
283
G
H:
F
284
L
H:
S
285
G
H:
F
296
L
H:
R
302
G
H:
E
303
D
H:
T
307
I
H:
R
334
Q
H:
I
346
V
H:
N
390
I
Show more
L
L:
V
34
L
L:
Q
47
R
L:
R
77
K
L:
A
81
T
L:
E
98
R
L:
T
131
I
L:
I
149
V
L:
I
150
T
L:
K
215
R
L:
A
252
T
L:
A
271
T
L:
K
441
R
L:
R
447
K
L:
V
596
I
L:
S
616
N
L:
P
617
S
L:
R
623
K
L:
K
626
R
Show more
M
M:
K
204
R
N
N:
S
144
F
N:
N
427
S
N:
G
431
R
N:
G
443
N
N:
Y
451
H
N:
G
455
E
N:
S
456
P
N:
A
462
V
N:
S
470
G
N:
M
471
T
N:
S
481
F
N:
G
482
S
N:
L
505
S
N:
G
509
D
P
P:
S
26
P
P:
V
29
I
P:
A
34
E
P:
Q
45
H
P:
D
46
E
P:
A
48
S
P:
E
52
K
P:
E
54
K
P:
G
74
S
P:
I
95
A
P:
P
96
L
P:
R
98
G
P:
T
105
A
P:
C
109
R
P:
H
111
Y
P:
V
120
I
P:
D
136
E
P:
D
146
N
Show more
V
V:
S
26
P
V:
V
29
I
V:
A
34
E
V:
Q
45
H
V:
D
46
E
V:
A
48
S
V:
E
52
K
V:
E
54
K
V:
G
74
S
V:
I
95
A
V:
P
96
L
V:
R
98
G
V:
T
105
A
V:
C
109
R
V:
H
111
Y
V:
V
120
I
V:
D
136
E
V:
D
146
N
Show more
Deletions
None
Insertions
None
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