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PPD_001P78X.1

Display Name: USA/PPD_001P78X.1/2025-06-01
E. Young

Sample details

Collection date
2025-06-01
Country
USA
Admin level 1
Utah
Isolate name
MVs/Utah.USA/23.25/3[D8]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:47insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
D8

Authors

Author affiliations
Utah Public Health Laboratory, Department of Health

INSDC

INSDC accession
BioSample accession
NCBI release date
2025-08-20
NCBI update date
2025-08-20
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15248
# of SNPs
303
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
1
# of unknown bases
6585
# of frame shifts
0
Completeness
54.50%

Submission details

Submission ID
PX121933.1
Submitting group
Date submitted
2025-09-17 10:47:26 UTC
Date released
2025-09-17 11:00:43 UTC
Earliest release date
2025-08-20

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A413G
  • T422C
  • T449C
  • C518T
  • C538T
  • T572C
  • C596T
  • G626A
  • C629T
  • A747C
  • T791C
  • G809C
  • T860C
  • T881C
  • C1043T
  • A1055G
  • G1076A
  • C1101T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:D5G
  • C:K78R

    • H

  • H:G235E
  • H:G243E
  • H:A267I
  • H:R334Q
  • H:N390I
  • H:A400T
  • H:V412L
  • H:N416D
  • H:K575Q
  • H:V608A

    • L

  • L:R142K
  • L:A252T
  • L:L610S
  • L:Y613H
  • L:R623K
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A
  • L:V1343I
  • L:S1356P
  • L:A1653S
  • L:I1663V
  • L:V1705I
  • L:I1710F
  • L:S1711P
  • L:S1745N
  • L:V2096I
  • L:V2130I

    • N

  • N:S144F
  • N:K214Q
  • N:I406T
  • N:K441R
  • N:G443S
  • N:E446G
  • N:Y451N
  • N:S457I
  • N:A459L
  • N:P467L
  • N:M471T
  • N:R497K
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:S219G
  • P:A269V
  • P:G270E
  • P:I282T
  • P:K350R
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:S219G
  • V:G237S
    • Deletions
    None
    Insertions
    None

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