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PPD_001PCH7.1

USA/PPD_001PCH7.1/2025-07-08
N. Rhoades, L. Batoon, S. Hallis, S. Vo, R. Flores, N. Gurfeild & J. Corrigan

San Diego County Public Health Lab, San Diego, CA

Sample details

Collection date
2025-07-08
Sampling location
USA (California; San Diego County)
Isolate name
VV01-25-Q-16822-WNV-M08760-240723

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:12insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-08-26
NCBI update date
2025-10-21

Host

Host

Submission details

Submission ID
OZ309033.1
Submitting group
Date submitted
2026-04-11 16:11:34 UTC
Date released
2026-04-11 17:54:38 UTC
Earliest release date
2025-08-26

Alignment and QC

Length
10933 (99.1%)
# of SNPs
111
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
  • A2136G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:E150D
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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