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PPD_001R9CH.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PPD_001R9CH.1/2025-10-06
E. B. Fox,
J. M. Garrigues &
N. M. Green
Sample details
Collection date
2025-10-06
Country
USA
Admin level 1
California
Isolate name
MVs/California.USA/41.25[D8]
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-25 14:44
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Genotype
Genotype
D8
Authors
Author affiliations
Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories
INSDC
INSDC accession
PX475840.1
NCBI release date
2025-11-02
NCBI update date
2025-11-02
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
15894
Completeness
100.00%
# of SNPs
540
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0
Submission details
Submission ID
PX475840.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-25 14:44:06 UTC
Date released
2025-11-25 15:15:11 UTC
Earliest release date
2025-11-02
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
A
84
G
G
97
A
G
122
A
T
224
C
A
257
G
G
269
A
G
293
A
G
305
A
C
341
T
A
344
G
G
353
A
G
368
A
A
413
G
T
422
C
T
449
C
C
518
T
C
538
T
T
572
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
C
C:
D
5
G
C:
K
78
R
C:
G
181
V
F
F:
L
3
P
F:
V
5
A
F:
A
9
V
F:
F
11
V
F:
V
14
A
F:
I
38
T
F:
S
276
A
F:
H
419
R
H
H:
R
175
K
H:
G
235
E
H:
G
243
E
H:
A
267
I
H:
R
334
Q
H:
N
390
I
H:
A
400
T
H:
V
412
L
H:
N
416
D
H:
T
446
S
H:
V
451
M
H:
K
575
Q
H:
V
608
A
L
L:
P
43
S
L:
A
81
T
L:
R
142
K
L:
A
252
T
L:
P
275
S
L:
F
321
C
L:
E
329
D
L:
L
610
S
L:
Y
613
H
L:
R
623
K
L:
E
628
K
L:
V
632
I
L:
N
641
D
L:
I
650
M
L:
T
652
A
L:
D
1037
G
L:
R
1044
G
L:
V
1343
I
Show more
N
N:
S
144
F
N:
K
214
Q
N:
I
406
T
N:
K
441
R
N:
G
443
S
N:
E
446
G
N:
Y
451
N
N:
S
457
I
N:
A
459
L
N:
P
467
L
N:
M
471
T
N:
R
497
K
N:
G
509
S
P
P:
E
54
K
P:
T
92
A
P:
K
195
R
P:
S
219
G
P:
A
269
V
P:
G
270
E
P:
I
282
T
P:
K
350
R
P:
R
355
K
P:
V
414
A
P:
V
446
M
P:
A
459
V
V
V:
E
54
K
V:
T
92
A
V:
K
195
R
V:
S
219
G
V:
G
237
S
Deletions
None
Insertions
None
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